DNA Binding Motif

						

			
Accessions: 1j5n_A (3D-footprint 20231221)

			
Names: Nonhistone chromosomal protein 6A
Organisms: Saccharomyces cerevisiae, Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Solution Structure of the Non-Sequence-Specific HMGB protein NHP6A in complex with SRY DNA
Length: 7
Consensus: AACAATc
Weblogo: 
PSSM: P0      A      C      G      T
01     96      0      0      0      A
02     76      0     19      1      A
03      0     96      0      0      C
04     96      0      0      0      A
05     96      0      0      0      A
06      0      0      0     96      T
07     20     38     19     19      c
Binding TFs: 1j5n_A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
Binding Sites: 1j5n_B
1j5n_C
			
Publications: Masse J.E, Wong B, Yen Y.M, Allain F.H, Johnson R.C, Feigon J. The S. cerevisiae architectural HMGB protein NHP6A complexed with DNA: DNA and protein conformational changes upon binding. Journal of molecular biology 323:263-84 (2002). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.