DNA Binding Motif

						

			
Accessions: 4jcy_AB (3D-footprint 20231221)

			
Names: Csp231I C protein
Organisms: Citrobacter sp. RFL231
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of the Restriction-Modification Controller Protein C.Csp231I OR operator complex
Length: 15
Consensus: CTAAGAnnnTnTTAG
Weblogo: 
PSSM: P0      A      C      G      T
01      0     96      0      0      C
02     12     15      3     66      T
03     78      3     12      3      A
04     96      0      0      0      A
05      3      3     87      3      G
06     87      3      3      3      A
07     24     24     24     24      n
08     24     24     24     24      n
09     24     24     24     24      n
10      9      3     12     72      T
11     24     24     24     24      n
12      0      0      0     96      T
13      3     21      3     69      T
14     87      3      3      3      A
15      0      0     96      0      G
Binding TFs: 4jcy_A / 4jcy_B (Helix-turn-helix, Helix-turn-helix domain, Helix-turn-helix domain)
Binding Sites: 4jcy_C
4jcy_D
			
Publications: Shevtsov M.B, Streeter S.D, Thresh S.J, Swiderska A, McGeehan J.E, Kneale G.G. Structural analysis of DNA binding by C.Csp231I, a member of a novel class of R-M controller proteins regulating gene expression. Acta crystallographica. Section D, Biological crystallography 71:398-407 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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