DNA Binding Motif

						

			
Accessions: EEAD0152 (EEADannot 2025-01-07)

			
Names: ChCUC1-chipseq
Organisms: Cardamine hirsuta
Libraries: EEADannot 2025-01-07 1
1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed]
Length: 8
Consensus: CTCsRCCr
Weblogo: 
PSSM: P0      A      C      G      T
01     41   1165      0      7      C
02    198      0    178    837      T
03     60    914      0    238      C
04      0    802    402      9      s
05    830      0    324     59      R
06      0   1161     51      0      C
07      0   1212      1      0      C
08    530     27    500    156      r
Binding TFs: CUP-SHAPED-COTYLEDON1        
			
Publications: Hu ZL, Wilson-Sanchez D, Bhatia N, Rast-Somssich MI, Wu A, Vlad D, McGuire L, Nikolov LA, Laufs P, Gan X, Laurent S, Runions A, Tsiantis M. A CUC1/auxin genetic module links cell polarity to patterned tissue growth and leaf shape diversity in crucifer plants. Proc Natl Acad Sci U S A : (2024). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.