DNA Binding Motif

						

			
Accessions: MA1843.1 (JASPAR 2024)

			
Names: AP4
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 20
Consensus: gwwrawCAGCTGathawcar
Weblogo: 
PSSM: P0      A      C      G      T
01    238    194    360    208      g
02    274    233    238    255      w
03    270    232    221    276      w
04    309    184    275    232      r
05    610    140    156     93      a
06    296    118     59    527      w
07     23    938     20     19      C
08    980      5      7      8      A
09      5     19    963     13      G
10     15    961     20      5      C
11      5      4      4    986      T
12      4      5    986      5      G
13    613     43     96    247      a
14     97    165    141    597      t
15    251    274    188    287      h
16    305    217    232    246      a
17    281    232    237    251      w
18    230    362    193    216      c
19    363    246    185    206      a
20    256    222    302    220      r
Type: Heterodimer
Binding TFs: Q4H3W8 (Helix-loop-helix DNA-binding domain)
Q4H3W8
			
Publications: Simionato E, Ledent V, Richards G, Thomas-Chollier M, Kerner P, Coornaert D, Degnan BM, Vervoort M. Origin and diversification of the basic helix-loop-helix gene family in metazoans: insights from comparative genomics. BMC Evol Biol : (2007). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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