DNA Binding Motif

						

			
Accessions: MA1882.1 (JASPAR 2024)

			
Names: Hnf1
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 20
Consensus: wwwwwaatTAATTrvwwwww
Weblogo: 
PSSM: P0      A      C      G      T
01    452     95    103    350      w
02    322    115    122    441      w
03    290    149    166    395      w
04    307    192    204    297      w
05    273    203    186    338      w
06    372    214    188    227      a
07    386    200    239    175      a
08    102    170    121    607      t
09     29     32      8    931      T
10    946     16     22     16      A
11    942     13     27     18      A
12     24     35     24    916      T
13     38     29     55    878      T
14    540     68    254    138      r
15    288    253    262    196      v
16    260    241    204    295      w
17    307    197    186    310      w
18    307    177    158    358      w
19    320    144    136    400      w
20    420    117    117    346      w
Type: Heterodimer
Binding TFs: Q4H3D7 (Homeobox domain, Hepatocyte nuclear factor 1 (HNF-1), N terminus)
Q4H3D7
			
Publications: José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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