DNA Binding Motif

						

			
Accessions: 6jnn_B (3D-footprint 20231221)

			
Names: Lysine-specific demethylase REF6
Organisms: Arabidopsis thaliana
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: REF6 ZnF2-4-NAC004-mC1 complex
Length: 6
Consensus: aACAGA
Weblogo: 
PSSM: P0      A      C      G      T
01     39     19     19     19      a
02     96      0      0      0      A
03      0     96      0      0      C
04     96      0      0      0      A
05      3      3     85      5      G
06     72      8      8      8      A
Binding TFs: 6jnn_B (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Binding Sites: 6jnn_E
6jnn_F
			
Publications: Qiu Q, Mei H, Deng X, He K, Wu B, Yao Q, Zhang J, Lu F, Ma J, Cao X. DNA methylation repels targeting of Arabidopsis REF6. Nat Commun 10:2063 (2019). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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