DNA Binding Motif

						

			
Accessions: 4s2q_D (3D-footprint 20231221)

			
Names: Transcription factor SOX-9
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal Structure of HMG domain of the chondrogenesis master regulator, Sox9 in complex with ChIP-Seq identified DNA element
Length: 7
Consensus: wACAaAg
Weblogo: 
PSSM: P0      A      C      G      T
01     44      9      9     34      w
02     91      2      1      2      A
03     11     69     11      5      C
04     73      3     18      2      A
05     60     11     14     11      a
06     73      3     17      3      A
07     12     13     60     11      g
Binding TFs: 4s2q_D (HMG (high mobility group) box, Domain of unknown function (DUF1898))
Binding Sites: 4s2q_A
4s2q_B
			
	
			


			

				

				
				
				
				

			

			

		

	
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