DNA Binding Motif

						

			
Accessions: RcsB (RegulonDB 7.5)

			
Names: RcsB
Organisms: ECK12
Libraries: RegulonDB 7.5 1
1 Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muniz-Rascado L, Garcia-Sotelo JS, Weiss V, Solano-Lira H, Martinez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernandez S, Alquicira-Hernandez K, Lopez-Fuentes A, Porron-Sotelo L, Huerta AM, Bonavides-Martinez C, Balderas-Martinez YI, Pannier L, Olvera M, Labastida A, Jimenez-Jacinto V, Vega-Alvarado L, Del Moral-Chavez V, Hernandez-Alvarez A, Morett E, Collado-Vides J. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Res. 2013 Jan 1;41(D1):D203-D213. [Pubmed]
Length: 14
Consensus: AwYmrGAyKWwTYT
Weblogo: 
PSSM: P0      A      C      G      T
01      7      0      0      0      A
02      2      1      1      3      w
03      0      2      0      5      Y
04      4      2      1      0      m
05      3      0      4      0      r
06      0      0      7      0      G
07      7      0      0      0      A
08      1      3      0      3      y
09      0      0      2      5      K
10      5      0      0      2      W
11      4      0      0      3      w
12      0      1      1      5      T
13      0      5      0      2      Y
14      1      1      0      5      T
Binding TFs: ECK120005288 (Response regulator receiver domain, Bacterial regulatory proteins, luxR family)
Binding Sites: ECK120011326
ECK120011819
ECK120012275
ECK120013232
ECK120013577
ECK120015223
ECK120015225
ECK120015810
ECK120015814
ECK120029979
ECK120048839
ECK125109046
ECK125109049
ECK125109444
ECK125141920
			
Publications: Venkatesh GR., Kembou Koungni FC., Paukner A., Stratmann T., Blissenbach B., Schnetz K. BglJ-RcsB heterodimers relieve repression of the Escherichia coli bgl operon by H-NS. J Bacteriol. 192(24):6456-64 (2010). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.