DNA Binding Motif

						

			
Accessions: Hoxd3_DBD (HumanTF 1.0)

			
Names: Hoxd3
Organisms: Mus musculus
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: monomeric; SELEX cycle: 4
Length: 10
Consensus: rsyaATTArs
Weblogo: 
PSSM: P0      A      C      G      T
01    439    283    410    241      r
02    245    408    479    241      s
03     82    505     16    868      y
04   1373    457    186    168      a
05   1373    117     77    162      A
06     30      0     67   1373      T
07     80     79    367   1373      T
08   1373     28     20    109      A
09    453    290    427    204      r
10    250    433    368    322      s
Binding TFs: Hoxd3_DBD (Homeobox domain)
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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