DNA Binding Motif

						

			
Accessions: 3fyl_AB (3D-footprint 20231221)

			
Names: Glucocorticoid receptor
Organisms: Rattus norvegicus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: GR DNA binding domain:CGT complex
Length: 13
Consensus: GnACAnnntGTaC
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0     96      0      G
02     24     24     24     24      n
03     96      0      0      0      A
04      0     96      0      0      C
05     96      0      0      0      A
06     24     24     24     24      n
07     24     24     24     24      n
08     24     24     24     24      n
09     16     13     13     54      t
10      0      0     96      0      G
11      0      0      0     96      T
12     54     13     16     13      a
13      0     96      0      0      C
Type: Heterodimer
Binding TFs: 3fyl_A (Zinc finger, C4 type (two domains))
3fyl_B (Zinc finger, C4 type (two domains))
Binding Sites: 3fyl_C
3fyl_D
			
Publications: Meijsing S.H, Pufall M.A, So A.Y, Bates D.L, Chen L, Yamamoto K.R. DNA binding site sequence directs glucocorticoid receptor structure and activity. Science (New York, N.Y.) 324:407-10 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.