DNA Binding Motif
| Accessions: | MA2446.1 (JASPAR 2024) |
| Names: | SPL5A |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | DAP-seq |
| Length: | 13 |
| Consensus: | gCGGTAsTACCGc |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 15947 12003 70555 6875 g 02 5445 83151 3609 13175 C 03 9775 2487 87410 5708 G 04 3218 1362 95423 5377 G 05 1990 3613 899 98878 T 06 99057 1008 1375 3940 A 07 597 36788 67409 586 s 08 2632 1278 698 100772 T 09 100332 461 2840 1747 A 10 2049 96723 3519 3089 C 11 5288 84490 5050 10552 C 12 11272 2886 87390 3832 G 13 6439 67884 15278 15779 c |
| Binding Sites: | MA2446.1.11 / MA2446.1.12 / MA2446.1.16 / MA2446.1.20 / MA2446.1.6 / MA2446.1.7 MA2446.1.1 MA2446.1.3 MA2446.1.4 MA2446.1.10 MA2446.1.13 MA2446.1.14 MA2446.1.15 MA2446.1.17 MA2446.1.18 MA2446.1.19 MA2446.1.2 MA2446.1.5 MA2446.1.8 MA2446.1.9 |
| Publications: | Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett 580:2109-16 (2006). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.