DNA Binding Motif

						

			
Accessions: MA2104.1 (JASPAR 2024)

			
Names: IDD11
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 12
Consensus: AAaACGACAAAA
Weblogo: 
PSSM: P0      A      C      G      T
01    680     12     72    236      A
02    846      2      2    150      A
03    641     70    142    147      a
04    915     39     41      5      A
05    209    682     75     34      C
06      7      0    990      3      G
07    991      9      0      0      A
08      0   1000      0      0      C
09   1000      0      0      0      A
10    959     12     24      5      A
11    885     31     63     21      A
12    682     70     77    171      A
Type: Heterodimer
Binding TFs: Q9LRW7 (Zinc finger, C2H2 type, Zinc-finger double-stranded RNA-binding)
Q9LRW7
			
Publications: Cui D, Zhao J, Jing Y, Fan M, Liu J, Wang Z, Xin W, Hu Y. The arabidopsis IDD14, IDD15, and IDD16 cooperatively regulate lateral organ morphogenesis and gravitropism by promoting auxin biosynthesis and transport. PLoS Genet : (2013;9(9):e1003759.). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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