DNA Binding Motif

						

			
Accessions: HOXD12_EOMES_1 (HumanTF2 1.0)

			
Names: HOXD12_EOMES
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 30
Consensus: agGyGyGAmrmwamatTmACACCTCrTaAa
Weblogo: 
PSSM: P0      A      C      G      T
01   2679    650    543    342      a
02    850    781   2582    870      g
03     41    192   2728    211      G
04      9   1800      0    964      y
05      5     19   2770      0      G
06    940   1099    220   1630      y
07     60    770   2637    289      G
08   2753      4    574     26      A
09   1035    897    246    589      m
10    922    409   1102    335      r
11   1139    704    615    309      m
12    786    403    477   1101      w
13   1659    307    196    605      a
14    693   1047    430    598      m
15   1474    460    240    594      a
16    204    658    684   1222      t
17    437    206    149   1975      T
18    732   1585    228    223      m
19   1965     50    505    247      A
20     26   2648     14     80      C
21   2393     22    306     47      A
22    247   2297    178     45      C
23    157   2289    286     35      C
24     26    750      7   2306      T
25    463   2676    442     76      C
26   1024    206   1389    353      r
27     71      0     53   2765      T
28   1942    608     73    713      a
29   2699     88    232    248      A
30   2422    234    341    588      a
Type: Heterodimer
Binding TFs: EOMES_TF2 (T-box)
HOXD12_TF1 (Homeobox domain)
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.