DNA Binding Motif

						

			
Accessions: MA0938.2 (JASPAR 2024)

			
Names: NAC058
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 24
Consensus: wwggTTaCkTGTgwcaCAAGwaAy
Weblogo: 
PSSM: P0      A      C      G      T
01    307    175    240    385      w
02    476    183    145    303      w
03    187    101    628    191      g
04    214    105    595    193      g
05     61      8      3   1035      T
06    204     15    132    756      T
07    571     79    189    268      a
08     17   1084      1      5      C
09      0      3    524    580      k
10      0      2      2   1103      T
11     93     61    936     17      G
12    133    128     45    801      T
13    262    153    450    242      g
14    288    254    269    296      w
15    241    474    157    235      c
16    739     57    150    161      a
17     35    876    112     84      C
18   1097      3      5      2      A
19   1009     86     10      2      A
20      5      1   1090     11      G
21    284    144    117    562      w
22    729    121     18    239      a
23    948      7     14    138      A
24    265    357    171    314      y
Type: Heterodimer
Binding TFs: Q9LS50 (No apical meristem (NAM) protein)
Q9LS50
Binding Sites: MA0938.2.2
MA0938.2.3
MA0938.2.1
MA0938.2.4
MA0938.2.8
MA0938.2.5
MA0938.2.9
MA0938.2.7
MA0938.2.10
MA0938.2.11
MA0938.2.12
MA0938.2.13
MA0938.2.14
MA0938.2.15
MA0938.2.16
MA0938.2.17
MA0938.2.18
MA0938.2.19
MA0938.2.20
MA0938.2.6
			
Publications: Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.