DNA Binding Motif

						

			
Accessions: MA2183.1 (JASPAR 2024)

			
Names: nhr-33
Organisms: Caenorhabditis elegans
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: yeast 1-hybrid
Length: 13
Consensus: wsTACAwACTAsw
Weblogo: 
PSSM: P0      A      C      G      T
01     27      0      6     66      w
02      0     35     53     11      s
03      0     13      0     86      T
04     90      2      2      5      A
05      0     92      5      2      C
06    100      0      0      0      A
07     38      5      0     56      w
08    100      0      0      0      A
09      0     93      6      0      C
10      3      3      0     93      T
11     93      0      0      6      A
12      8     35     51      5      s
13     32      8      5     54      w
Binding TFs: G5ED47
			
Publications: Warnhoff K, Roh HC, Kocsisova Z, Tan CH, Morrison A, Croswell D, Schneider DL, Kornfeld K. The Nuclear Receptor HIZR-1 Uses Zinc as a Ligand to Mediate Homeostasis in Response to High Zinc. PLoS Biol : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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