DNA Binding Motif

						

			
Accessions: 4egy_AB (3D-footprint 20231221)

			
Names: Arabinose metabolism transcriptional repressor
Organisms: Bacillus subtilis, strain 168
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal Structure of AraR(DBD) in complex with operator ORA1
Length: 10
Consensus: TGyACGAaCA
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0     96      T
02      0      0     96      0      G
03      7     28      8     53      y
04     74     10      7      5      A
05      0     96      0      0      C
06      3      5     81      7      G
07     67     15      7      7      A
08     53      9     17     17      a
09      0     96      0      0      C
10     96      0      0      0      A
Type: Heterodimer
Binding TFs: 4egy_A (Bacterial regulatory proteins, gntR family, DeoR-like helix-turn-helix domain, HTH domain)
4egy_B (Bacterial regulatory proteins, gntR family, DeoR-like helix-turn-helix domain, HTH domain)
Binding Sites: 4egy_T
4egy_U
			
Publications: Jain D, Nair D.T. Spacing between core recognition motifs determines relative orientation of AraR monomers on bipartite operators. Nucleic acids research 41:639-47 (2013). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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