DNA Binding Motif

						

			
Accessions: Rara_DBD_3 (HumanTF 1.0)

			
Names: Rara
Organisms: Mus musculus
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Notes: Site type: dimeric; SELEX cycle: 4
Length: 15
Consensus: rAGGTCAAAAGGTCA
Weblogo: 
PSSM: P0      A      C      G      T
01    602     43    394     24      r
02    830      7    152      0      A
03      0      0   1231      2      G
04      1      0   1131     97      G
05      4      4      7   1070      T
06      0   1071      6      3      C
07   1047      0      3      1      A
08   1041      3      5     20      A
09    998      1     51     35      A
10    996      2     65      1      A
11      1      0   1156      0      G
12      0      1   1016    176      G
13      1      3     15   1007      T
14      1   1103      7      7      C
15   1010      0      0      2      A
Binding TFs: Rara_DBD (Zinc finger, C4 type (two domains))
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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