DNA Binding Motif

						

			
Accessions: HOXB2_RFX5_2 (HumanTF2 1.0)

			
Names: HOXB2_RFX5
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 15
Consensus: TAATkrCmtrGCAAC
Weblogo: 
PSSM: P0      A      C      G      T
01    217     56     40   1368      T
02   1368     57    281    230      A
03   1368     15     60     10      A
04     30    346    100   1368      T
05    153    277    519    849      k
06    907    188    461    147      r
07     36   1060    175     98      C
08    381    484    281    222      m
09    129    338     73    829      t
10    664    168    500     37      r
11    253     41   1368     18      G
12     94   1368     22    444      C
13   1368     24    119     68      A
14   1368     15     50     39      A
15     11   1368     17     69      C
Type: Heterodimer
Binding TFs: HOXB2_TF1 (Homeobox domain)
RFX5_TF2 (RFX DNA-binding domain, Poxvirus D5 protein-like)
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.