DNA Binding Motif

						

			
Accessions: UP00065A_1 (UniPROBE 20160601)

			
Names: ZF5, Zfp-161, Zfp-5, Zfp161, Zfp5, zinc finger protein 161, Zinc finger protein 5
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 16
Consensus: kgrcGCGCGCryyyrw
Weblogo: 
PSSM: P0      A      C      G      T
01   0.14   0.11   0.28   0.46      k
02   0.22   0.08   0.50   0.20      g
03   0.29   0.04   0.60   0.06      r
04   0.11   0.56   0.22   0.12      c
05   0.11   0.02   0.85   0.01      G
06   0.02   0.94   0.01   0.04      C
07   0.09      0   0.90      0      G
08      0   0.90      0   0.09      C
09   0.04   0.01   0.94   0.02      G
10   0.01   0.85   0.02   0.11      C
11   0.33   0.05   0.52   0.11      r
12   0.06   0.60   0.04   0.29      y
13   0.21   0.39   0.13   0.27      y
14   0.13   0.37   0.09   0.41      y
15   0.27   0.10   0.48   0.15      r
16   0.36   0.16   0.19   0.29      w
Binding TFs: UP00065A (Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Binding Sites: ACGCGCAT
ACGCGCGC
AGCGCGCG
AGGCGCGC
ATGCGCGC
CACGCGCA
CACGCGCG
CCGCGCGC
CGCGCGCA
CGCGCGCC
CGCGCGCG
CGGCGCGC
GAGCGCGC
GCACGCGC
GCGCGCAC
GCGCGCCC
GCGCGCGA
GCGCGCGC
GGCGCGCA
GGCGCGCC
			
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.