DNA Binding Motif

						

			
Accessions: MA1303.1 (JASPAR 2024), M0790 (AthalianaCistrome v4_May2016)

			
Names: WRKY22, T18605;, WRKY22.DAP
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: DAP-seq
Length: 13
Consensus: aAAAGTCAACkat
Weblogo: 
PSSM: P0      A      C      G      T
01    318    116     78     87      a
02    461     29     50     59      A
03    518      5     14     62      A
04    532      0     58      9      A
05      0      0    599      0      G
06      0      0      0    599      T
07      0    599      0      0      C
08    599      0      0      0      A
09    599      0      0      0      A
10     71    508      0     20      C
11     54     60    314    171      k
12    182    140    128    149      a
13    140    135     67    257      t
Type: Heterodimer
Binding TFs: O04609 / T18605 (WRKY DNA -binding domain)
O04609
Binding Sites: MA1303.1.16
MA1303.1.4
MA1303.1.5
MA1303.1.18
MA1303.1.20
MA1303.1.3
MA1303.1.1
MA1303.1.10
MA1303.1.11
MA1303.1.12
MA1303.1.13
MA1303.1.14
MA1303.1.15
MA1303.1.17
MA1303.1.19
MA1303.1.2
MA1303.1.6
MA1303.1.7
MA1303.1.8
MA1303.1.9
			
Publications:  Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. [Pubmed]


O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.