DNA Binding Motif

						

			
Accessions: 1tgh_A (3D-footprint 20231221)

			
Names: PROTEIN (TATA BINDING PROTEIN (TBP))
Organisms: Homo sapiens
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: TATA BINDING PROTEIN (TBP)/DNA COMPLEX
Length: 9
Consensus: gTATATATA
Weblogo: 
PSSM: P0      A      C      G      T
01     22     18     39     17      g
02      0      0      0     96      T
03     95      0      0      1      A
04      6      3      3     84      T
05     91      0      5      0      A
06      0     13      0     83      T
07     78      6      8      4      A
08      0      0      0     96      T
09     87      2      4      3      A
Binding TFs: 1tgh_A (Transcription factor TFIID (or TATA-binding protein, TBP))
Binding Sites: 1tgh_B / 1tgh_C
			
Publications: Juo Z.S, Chiu T.K, Leiberman P.M, Baikalov I, Berk A.J, Dickerson R.E. How proteins recognize the TATA box. Journal of molecular biology 261:239-54 (1996). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.