DNA Binding Motif

						

			
Accessions: 5ze0_N (3D-footprint 20231221)

			
Names: HMGB1 A-B box
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Hairpin Forming Complex, RAG1/2-Nicked(with Dideoxy) 12RSS/23RSS complex in Mg2+
Length: 14
Consensus: CTnnnnnnnnacTT
Weblogo: 
PSSM: P0      A      C      G      T
01      0     96      0      0      C
02      0      0      0     96      T
03     24     24     24     24      n
04     24     24     24     24      n
05     24     24     24     24      n
06     24     24     24     24      n
07     24     24     24     24      n
08     24     24     24     24      n
09     24     24     24     24      n
10     24     24     24     24      n
11     31     21     23     21      a
12     22     34     20     20      c
13      1      2      1     92      T
14      0      0      0     96      T
Binding TFs: 5ze0_N (HMG (high mobility group) box, Domain of unknown function (DUF1898))
Binding Sites: 5ze0_G
5ze0_M
			
Publications: Kim MS, Chuenchor W, Chen X, Cui Y, Zhang X, Zhou ZH, Gellert M, Yang W. Cracking the DNA Code for V(D)J Recombination. Mol Cell 70:358-370 (2018). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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