DNA Binding Motif
| Accessions: | MA1651.1 (JASPAR 2024) |
| Names: | ZFP42 |
| Organisms: | Homo sapiens |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ChIP-seq |
| Length: | 21 |
| Consensus: | swtccAArATGGCTGCcycsr |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 368 469 502 413 s 02 454 420 412 466 w 03 405 402 390 555 t 04 391 660 327 374 c 05 329 991 198 234 c 06 1608 32 79 33 A 07 1553 54 69 76 A 08 817 161 668 106 r 09 1724 7 13 8 A 10 6 13 7 1726 T 11 5 5 1741 1 G 12 25 29 1574 124 G 13 31 1703 7 11 C 14 42 116 325 1269 T 15 82 281 1241 148 G 16 125 1377 78 172 C 17 166 1079 187 320 c 18 417 457 359 519 y 19 267 651 424 410 c 20 366 563 447 376 s 21 441 405 504 402 r |
| Type: | Heterodimer |
| Binding TFs: | Q96MM3 (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) Q96MM3 |
| Binding Sites: | MA1651.1.1 MA1651.1.10 MA1651.1.11 MA1651.1.12 MA1651.1.13 / MA1651.1.7 MA1651.1.14 MA1651.1.15 / MA1651.1.8 MA1651.1.16 MA1651.1.17 MA1651.1.18 / MA1651.1.9 MA1651.1.10 / MA1651.1.19 MA1651.1.1 / MA1651.1.2 MA1651.1.11 / MA1651.1.20 MA1651.1.3 MA1651.1.2 / MA1651.1.4 MA1651.1.3 / MA1651.1.5 MA1651.1.4 / MA1651.1.6 MA1651.1.5 / MA1651.1.7 MA1651.1.8 MA1651.1.6 / MA1651.1.9 MA1651.1.12 MA1651.1.13 MA1651.1.14 MA1651.1.15 MA1651.1.16 MA1651.1.17 MA1651.1.18 MA1651.1.19 MA1651.1.20 |
| Publications: | Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.