DNA Binding Motif

						

			
Accessions: M0066 (AthalianaCistrome v4_May2016)

			
Names: RRTF1.ampDAP, T19766;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Length: 19
Consensus: rraaAWkrCGGCGsmgrwd
Weblogo: 
PSSM: P0      A      C      G      T
01    149     87    206    136      r
02    174    105    207     92      r
03    276    104     93    105      a
04    301     31    140    106      a
05    441      0     62     75      A
06    152     13      2    411      W
07    111      0    204    263      k
08    202     14    328     34      r
09      0    578      0      0      C
10      0      0    576      2      G
11      0      0    578      0      G
12      0    578      0      0      C
13      0      0    523     55      G
14     23    173    352     30      s
15    184    256     50     88      m
16    115     55    302    106      g
17    164    100    196    118      r
18    164    131     86    197      w
19    173     67    180    158      d
Binding TFs: T19766 (AP2 domain)
			
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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