DNA Binding Motif

						

			
Accessions: UP00472A_1 (UniPROBE 20160601), UP00472A_2 (UniPROBE 20160601)

			
Names: Vhr2, VHt1 Regulator
Organisms: Saccharomyces cerevisiae
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 23
Consensus: tdhyrgdGATGACTCAytcahwr
Weblogo: 
PSSM: P0      A      C      G      T
01   0.08   0.18   0.11   0.63      t
02   0.25   0.17   0.30   0.28      d
03   0.32   0.27   0.08   0.33      h
04   0.16   0.37   0.21   0.27      y
05   0.35   0.22   0.31   0.13      r
06   0.23   0.10   0.49   0.18      g
07   0.29   0.07   0.33   0.31      d
08   0.04   0.05   0.80   0.11      G
09   0.78   0.03   0.18   0.01      A
10      0   0.01      0   0.98      T
11      0      0   0.99   0.01      G
12   0.98      0   0.01   0.01      A
13      0   0.87   0.12   0.01      C
14      0   0.01      0   0.99      T
15   0.06   0.93      0      0      C
16   0.96   0.01   0.01   0.02      A
17   0.06   0.36   0.13   0.45      y
18   0.15   0.13   0.24   0.48      t
19   0.18   0.50   0.17   0.15      c
20   0.47   0.12   0.18   0.23      a
21   0.25   0.25   0.20   0.30      h
22   0.31   0.19   0.13   0.36      w
23   0.28   0.11   0.47   0.14      r
Binding TFs: UP00472A (Transcription factor Vhr1)
Binding Sites: GTGACTCA
ATGACTAA
ATGACTCA
ATGAGTCA
CATGACTC
CTGACTCA
CTGAGTCA
GAGTCACA
GAGTCACC
GAGTCATA
GAGTCATC
GTGAGTCA
TGACTCAA
AATGACTC
AGAGTCAT
AGTCATCG
ATGACTAC
ATGACTCC
CATGACTA
GATGACTA
			
Publications: Gordân R, Murphy KF, McCord RP, Zhu C, Vedenko A, Bulyk ML. Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights. Genome Biol : (2011). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.