DNA Binding Motif
| Accessions: | TBX6_2 (HT-SELEX2 May2017), MA1567.1 (JASPAR 2024) |
| Names: | TBX6 |
| Organisms: | Homo sapiens |
| Libraries: | HT-SELEX2 May2017 1, JASPAR 2024 2 1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | HT-SELEX |
| Length: | 10 |
| Consensus: | ragGTGTkAa |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 2998 1630 4003 2456 r 02 11087 1173 3347 2157 a 03 1882 2913 11087 1058 g 04 58 63 11087 0 G 05 44 1002 0 11087 T 06 14 0 11087 12 G 07 552 3053 320 11087 T 08 1430 4876 11087 5964 k 09 11087 652 2251 713 A 10 4550 2066 2141 2330 a |
| Type: | Heterodimer |
| Binding TFs: | TBX6 (T-box) O95947 (T-box) O95947 |
| Publications: | Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed] Wilson V, Conlon FL. The T-box family. Genome Biol : (2002;3(6):REVIEWS3008.). [Pubmed] |
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