DNA Binding Motif

						

			
Accessions: 1jk1_A (3D-footprint 20231221)

			
Names: ZIF268
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Zif268 D20A Mutant Bound to WT DNA Site
Length: 10
Consensus: cCGCCCaCGC
Weblogo: 
PSSM: P0      A      C      G      T
01     13     54     16     13      c
02      0     96      0      0      C
03      0      0     96      0      G
04      0     96      0      0      C
05      0     96      0      0      C
06      0     96      0      0      C
07     57     13     13     13      a
08      0     96      0      0      C
09      0      0     96      0      G
10      0     96      0      0      C
Binding TFs: 1jk1_A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Binding Sites: 1jk1_C
1jk1_B
			
Publications: Miller J.C, Pabo C.O. Rearrangement of side-chains in a Zif268 mutant highlights the complexities of zinc finger-DNA recognition. Journal of molecular biology 313:309-15 (2001). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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