DNA Binding Motif

						

			
Accessions: MA1784.1 (JASPAR 2024)

			
Names: NAC011
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 21
Consensus: gTTgCTTswrhyrCAAGywAy
Weblogo: 
PSSM: P0      A      C      G      T
01    237 74.561    548    140      g
02  4.386      0      0    996      T
03 26.316      0  8.772    965      T
04    189 26.316 543.86    241      g
05      0   1000      0      0      C
06      0      0 48.246    952      T
07      0  8.772      0    991      T
08    105    430    373 92.105      s
09 271.93    184    136    408      w
10    281    175    298    246      r
11    276    373    101    250      h
12    215    307    132    346      y
13    373 70.175    311    246      r
14      0 793.86    105    101      C
15    996      0  4.386      0      A
16 793.86    202      0  4.386      A
17      0      0   1000      0      G
18    162    259    118    461      y
19    618    110 17.544    254      w
20    899  4.386  4.386 92.105      A
21    118    535 92.105    254      y
Type: Heterodimer
Binding TFs: Q9LQK5 (No apical meristem (NAM) protein)
Q9LQK5
			
Publications: Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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