DNA Binding Motif

						

			
Accessions: GCR_MOUSE.H10MO.C|M01124 (HOCOMOCO 10)

			
Names: Nr3c1
Organisms: Mus musculus
Libraries: HOCOMOCO 10 1
1 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]
Notes: Steroid hormone receptors (NR3){2.1.1}; GR-like receptors (NR3C){2.1.1.1}
Length: 18
Consensus: rrGAACAkavwGtychrr
Weblogo: 
PSSM: P0      A      C      G      T
01   1130    904   1807    281      r
02   2413     44   1641     24      r
03    521     81   3467     53      G
04   2816    284    822    200      A
05   3848     50    111    113      A
06    241   2963    832     86      C
07   3339    114    367    302      A
08    792    485   1594   1251      k
09   1520    779    801   1022      a
10   1224   1300   1230    368      v
11   1299    580    366   1877      w
12    461    246   3070    345      G
13    589    346    958   2229      t
14    813   1213    907   1189      y
15    408   2749    559    406      c
16   1057   1403    508   1154      h
17   1372    428   1375    947      r
18   1130    567   1699    726      r
Binding TFs: GCR_MOUSE (Ligand-binding domain of nuclear hormone receptor, Zinc finger, C4 type (two domains), Glucocorticoid receptor)
			
Publications: Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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