DNA Binding Motif
| Accessions: | UP00000A_2 (UniPROBE 20160601) |
| Names: | AU022421, MAD homolog 3 (Drosophila), Madh3, mMad3, Mothers against decapentaplegic homolog 3, Mothers against DPP homolog 3, Smad 3, Smad3 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 17 |
| Consensus: | kmmgcCCCGCCacyyyb |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.15 0.13 0.25 0.47 k 02 0.32 0.29 0.15 0.25 m 03 0.26 0.41 0.11 0.22 m 04 0.21 0.22 0.35 0.22 g 05 0.17 0.51 0.08 0.24 c 06 0.05 0.76 0.09 0.10 C 07 0.05 0.79 0.12 0.04 C 08 0 0.94 0.03 0.02 C 09 0.04 0.05 0.89 0.02 G 10 0 0.91 0.02 0.06 C 11 0.03 0.94 0.01 0.02 C 12 0.64 0.14 0.11 0.11 a 13 0.24 0.39 0.18 0.19 c 14 0.21 0.27 0.09 0.43 y 15 0.09 0.45 0.21 0.25 y 16 0.18 0.27 0.15 0.40 y 17 0.10 0.25 0.37 0.28 b |
| Binding TFs: | UP00000A (MH1 domain) |
| Binding Sites: | AACCAGAC AATGTCTG ACCAGACA ACCAGACG ACGTCTAG ACGTCTGG ATCCAGAC ATGTCTAG ATGTCTGA ATGTCTGG CAGACATA CCAGACAA CCAGACAG CCCAGACA CGTCTGGA GCCAGACA GTCTAGAC GTCTGGAA TCCAGACA TCTAGACA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.