DNA Binding Motif

						

			
Accessions: MA2442.1 (JASPAR 2024)

			
Names: SPL3B
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 14
Consensus: aGCGGTAsTACCGc
Weblogo: 
PSSM: P0      A      C      G      T
01  59160  12032   9616   8689      a
02   7332  11128  69116   1921      G
03   2503  76408   1892   8694      C
04   9377   2172  76016   1932      G
05   1708   1396  86008    385      G
06   1161   2262    348  85726      T
07  86319    392    697   2089      A
08    508  57452  31088    449      s
09   3205   1404   1103  83785      T
10  83615   1116   2981   1785      A
11   8179  76740   2031   2547      C
12   9870  65698   3184  10745      C
13  10443   2036  73578   3440      G
14   6388  59572  12332  11205      c
Binding Sites: MA2442.1.10 / MA2442.1.12 / MA2442.1.13 / MA2442.1.14 / MA2442.1.15 / MA2442.1.18 / MA2442.1.19 / MA2442.1.3 / MA2442.1.4 / MA2442.1.5 / MA2442.1.6 / MA2442.1.7
MA2442.1.1
MA2442.1.11
MA2442.1.16
MA2442.1.17
MA2442.1.2
MA2442.1.20
MA2442.1.8
MA2442.1.9
			
Publications: Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett 580:2109-16 (2006). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.