DNA Binding Motif

						

			
Accessions: FOXA3_3 (HT-SELEX2 May2017)

			
Names: FOXA3
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 16
Consensus: csYTAwGTAAACAAAs
Weblogo: 
PSSM: P0      A      C      G      T
01   1096  14667   6824   5190      c
02   6375  15617   7791    350      s
03    171   7938     98  19784      Y
04   1102     49      0  27283      T
05  26391     33   2450     13      A
06  17988      9    120   9737      w
07     82     49  27714     20      G
08      0    167      0  27769      T
09  27709    183     14      0      A
10  27776     63     14      0      A
11  27772      0      9      0      A
12      3  26339      0   2457      C
13  27773     20      3      0      A
14  27434    368    423   1780      A
15  23842    484    542   6495      A
16   4337  10614   8652   4174      s
Binding TFs: FOXA3 (Fork head domain, Forkhead N-terminal region, HNF3 C-terminal domain)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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