DNA Binding Motif

						

			
Accessions: 1ngm_E (3D-footprint 20231221)

			
Names: Transcription initiation factor TFIID
Organisms: Saccharomyces cerevisiae, Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of a yeast Brf1-TBP-DNA ternary complex
Length: 7
Consensus: TAtAAaA
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0     96      T
02     96      0      0      0      A
03     16     13     13     54      t
04     96      0      0      0      A
05     96      0      0      0      A
06     54     13     13     16      a
07     96      0      0      0      A
Binding TFs: 1ngm_E (Transcription factor TFIID (or TATA-binding protein, TBP))
Binding Sites: 1ngm_G
1ngm_H
			
Publications: Juo Z.S, Kassavetis G.A, Wang J, Geiduschek E.P, Sigler P.B. Crystal structure of a transcription factor IIIB core interface ternary complex. Nature 422:534-9 (2003). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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