DNA Binding Motif

						

			
Accessions: PAX1_methyl_1 (HT-SELEX2 May2017)

			
Names: PAX1
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 17
Consensus: ysGTCACGCwTsAsyGm
Weblogo: 
PSSM: P0      A      C      G      T
01   1109   2094   1006   2060      y
02    528   3408   2860    652      s
03     44      6   6269    141      G
04    349     83     22   6269      T
05     70   6269     59    959      C
06   6269     38    591     37      A
07     16   6269     22    725      C
08     48      0   6269      2      G
09      9   6269   2027      9      C
10   2549    457     63   3720      w
11    138   1229      3   6269      T
12     78   2163   4106     35      s
13   6269     54   1086     41      A
14   1143   2139   1792   1195      s
15     59   2268    117   4001      y
16    611     32   6269   1191      G
17   2433   2453   1346     36      m
Binding TFs: PAX1 ('Paired box' domain, Homeodomain-like domain)
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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