DNA Binding Motif
| Accessions: | srp (DrosophilaTF 1.1) |
| Names: | srp |
| Organisms: | Drosophila melanogaster |
| Libraries: | DrosophilaTF 1.1 1 1 Down T.A, Bergman C.M, Su J, Hubbard T.J. Large-scale discovery of promoter motifs in Drosophila melanogaster. PLoS computational biology 3:e7 (2007). [Pubmed] |
| Length: | 10 |
| Consensus: | kyGATAAsry |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.09 0.13 0.5 0.28 k 02 0.19 0.44 0 0.37 y 03 0 0 1 0 G 04 1 0 0 0 A 05 0 0 0 1 T 06 1 0 0 0 A 07 0.97 0 0.03 0 A 08 0 0.35 0.56 0.09 s 09 0.47 0.09 0.41 0.03 r 10 0.19 0.34 0.19 0.28 y |
| Binding TFs: | srp (GATA zinc finger) |
| Binding Sites: | srp_1 srp_10 srp_11 srp_12 srp_13 srp_14 srp_15 srp_16 srp_17 srp_18 srp_19 srp_2 srp_20 srp_21 srp_22 srp_23 srp_24 srp_25 srp_26 srp_27 srp_28 srp_29 srp_3 srp_30 srp_31 srp_32 srp_4 srp_5 srp_6 srp_7 srp_8 srp_9 |
| Publications: | Senger K, Armstrong G.W, Rowell W.J, Kwan J.M, Markstein M, Levine M. Immunity regulatory DNAs share common organizational features in Drosophila. Molecular cell 13:19-32 (2004). [Pubmed] |
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