DNA Binding Motif

						

			
Accessions: MA1899.1 (JASPAR 2024)

			
Names: Mitf
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 20
Consensus: ssvmrtCACGTGAysysccs
Weblogo: 
PSSM: P0      A      C      G      T
01    243    255    280    223      s
02    218    280    276    226      s
03    274    255    256    215      v
04    255    265    239    240      m
05    331    184    344    142      r
06    146    190    204    459      t
07     57    845     59     40      C
08    865     33     61     42      A
09      7    895     18     81      C
10     77     26    886     10      G
11     23     21     25    931      T
12      8     28    954      9      G
13    755    105     78     61      A
14    104    416    150    330      y
15    240    266    250    244      s
16    224    270    246    260      y
17    220    286    277    218      s
18    237    285    243    235      c
19    194    355    233    218      c
20    233    279    278    210      s
Type: Heterodimer
Binding TFs: Q4H369 (Helix-loop-helix DNA-binding domain)
Q4H369
			
Publications: José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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