DNA Binding Motif
| Accessions: | UP00347A_1 (UniPROBE 20160601) |
| Names: | DEH1, Gzf3, J0806, NIL2, Protein GZF3, YJL110C |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 20 |
| Consensus: | twvmrrCYGATAAGrrwkwh |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.15 0.08 0.16 0.61 t 02 0.26 0.24 0.22 0.28 w 03 0.26 0.27 0.27 0.20 v 04 0.26 0.33 0.18 0.24 m 05 0.26 0.16 0.36 0.22 r 06 0.32 0.07 0.43 0.17 r 07 0.13 0.72 0.04 0.11 C 08 0.04 0.27 0 0.69 Y 09 0 0 0.99 0 G 10 0.99 0 0 0 A 11 0 0 0 0.99 T 12 0.98 0 0 0.02 A 13 0.99 0 0 0 A 14 0.01 0.06 0.93 0 G 15 0.27 0.22 0.49 0.01 r 16 0.28 0.17 0.44 0.12 r 17 0.51 0.13 0.11 0.25 w 18 0.24 0.23 0.25 0.28 k 19 0.34 0.16 0.23 0.28 w 20 0.32 0.25 0.16 0.27 h |
| Binding TFs: | UP00347A (GATA zinc finger) |
| Binding Sites: | ACGATAAG AGATAAGC AGATAAGG ATGATAAG CCCTTATC CCGATAAG CCTTATCA CCTTATCG CGATAAGA CGATAAGC CTCTTATC CTGATAAG CTTATCAA CTTATCGC CTTATCTA GATAAGCA GATAAGGA GATAAGGC GCTTATCA TCTTATCA |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
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