DNA Binding Motif

						

			
Accessions: MA1783.1 (JASPAR 2024)

			
Names: NAC005
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: DAP-seq
Length: 19
Consensus: TwrCTTsttywayAAGtww
Weblogo: 
PSSM: P0      A      C      G      T
01    222 59.322 27.119    692      T
02    361 77.966 91.525    469      w
03    415    183    271    131      r
04      0    998      0  1.695      C
05      0      0   3.39 996.61      T
06      0      0      0   1000      T
07    236    376    286    102      s
08    125    149  93.22    632      t
09    190    149    171    490      t
10    180    346 62.712    412      y
11    320    210    115    354      w
12    495    153    178    175      a
13 20.339 493.22 62.712    424      y
14    998      0  1.695      0      A
15    995  5.085      0      0      A
16      0      0   1000      0      G
17 62.712    158    117    663      t
18    281 66.102 20.339    632      w
19    463 18.644 20.339    498      w
Type: Heterodimer
Binding TFs: O81914 (No apical meristem (NAM) protein)
O81914
			
Publications: Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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