DNA Binding Motif

						

			
Accessions: MA1852.1 (JASPAR 2024)

			
Names: Emx
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 20
Consensus: wwttdryTAATTGrkkwwww
Weblogo: 
PSSM: P0      A      C      G      T
01    271    188    228    314      w
02    275    186    236    303      w
03    240    198    242    321      t
04    245    212    248    295      t
05    258    230    253    259      d
06    268    229    284    220      r
07    210    255    225    310      y
08     39     27     15    919      T
09    900     23     34     43      A
10    934     12     20     34      A
11     58     19     44    878      T
12     70     43     97    791      T
13    172     43    705     80      G
14    251    239    296    214      r
15    218    238    268    276      k
16    235    234    254    278      k
17    262    221    237    280      w
18    277    206    230    287      w
19    286    195    212    307      w
20    301    192    205    303      w
Type: Heterodimer
Binding TFs: Q4H3M8 (Homeobox domain)
Q4H3M8
			
Publications: José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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