DNA Binding Motif

						

			
Accessions: YycF (DBTBS 1.0)

			
Names: YycF
Organisms: Bacillus subtilis
Libraries: DBTBS 1.0 1
1 Sierro N, Makita Y, de Hoon M, Nakai K. DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic acids research 36:D93-6 (2008). [Pubmed]
Length: 20
Consensus: krvWTWACAdKWbhKTWACA
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      2      2      k
02      2      0      2      0      r
03      1      2      1      0      v
04      1      0      0      3      W
05      0      0      0      4      T
06      1      0      0      3      W
07      4      0      0      0      A
08      0      4      0      0      C
09      4      0      0      0      A
10      1      0      1      2      d
11      0      0      1      3      K
12      1      0      0      3      W
13      0      1      1      2      b
14      1      2      0      1      h
15      0      0      1      3      K
16      0      0      0      4      T
17      1      0      0      3      W
18      4      0      0      0      A
19      0      4      0      0      C
20      4      0      0      0      A
Binding TFs: YycF (Response regulator receiver domain, Transcriptional regulatory protein, C terminal)
Binding Sites: ftsA_6
tagD_5
ykvT
yocH_2
			
Publications: Fukuchi K, Kasahara Y, Asai K, Kobayashi K, Moriya S, Ogasawara N. The essential two-component regulatory system encoded by yycF and yycG modulates expression of the ftsAZ operon in Bacillus subtilis. Microbiology (Reading, England) 146 ( Pt 7):1573-83 (2000). [Pubmed]


Howell A, Dubrac S, Andersen K.K, Noone D, Fert J, Msadek T, Devine K. Genes controlled by the essential YycG/YycF two-component system of Bacillus subtilis revealed through a novel hybrid regulator approach. Molecular microbiology 49:1639-55 (2003). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.