DNA Binding Motif

						

			
Accessions: NR1D1_2 (HT-SELEX2 May2017)

			
Names: NR1D1
Organisms: Homo sapiens
Libraries: HT-SELEX2 May2017 1
1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]
Length: 20
Consensus: dawgTrGGTyAgTrGGTCAr
Weblogo: 
PSSM: P0      A      C      G      T
01   1809    864   1997   1925      d
02   6595    658    441   2072      a
03   3121     13    162   3473      w
04   1179   1445   2727   1244      g
05    318    848   1560   6595      T
06   3233    358   3362     43      r
07     16      2   6595    723      G
08     51      0   6595     12      G
09      0    206   1647   6595      T
10      0   6595      2   4243      y
11   6595      2      2      7      A
12    625   1241   4428    301      g
13     20    117    213   6595      T
14   3576     92   3018     11      r
15      0      0   6595   1113      G
16      8      0   6595      6      G
17    213    429    700   6595      T
18      1   6595     89    344      C
19   6595      4    917     20      A
20   1674   1532   1809   1580      r
Binding TFs: NR1D1 (Zinc finger, C4 type (two domains))
			
Publications: Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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