DNA Binding Motif

						

			
Accessions: ETV5_HOXA13 (HumanTF2 1.0)

			
Names: ETV5_HOXA13
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 15
Consensus: rmcGGAwGYcgTaaa
Weblogo: 
PSSM: P0      A      C      G      T
01    121      5     63     24      r
02     56     91     45     22      m
03     67    213     59      5      c
04      4      0    213      0      G
05      0      0    213     10      G
06    213     17     21     13      A
07    137     17      9     76      w
08      0     18    213      0      G
09     15     82      0    213      Y
10     46    109     32     27      c
11     54     28    160     19      g
12      9     23     41    213      T
13    155     11     31     58      a
14    213     48     28     68      a
15    213     56     54     37      a
Type: Heterodimer
Binding TFs: ETV5_TF1 (Ets-domain)
HOXA13_TF2 (Homeobox domain, Hox protein A13 N terminal)
HOXA13_Full (Homeobox domain, Hox protein A13 N terminal)
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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