DNA Binding Motif
| Accessions: | UP00333A_1 (UniPROBE 20160601) |
| Names: | O6257, Tea1, TY1 enhancer activator, YOR337W |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 20 |
| Consensus: | wtcTkCGGrAwTTAAwwAyC |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.40 0.09 0.17 0.34 w 02 0.23 0.14 0.04 0.59 t 03 0.16 0.42 0.23 0.19 c 04 0.05 0.01 0.02 0.92 T 05 0.02 0.13 0.53 0.32 k 06 0 0.99 0.01 0 C 07 0 0.01 0.99 0 G 08 0.01 0.03 0.96 0 G 09 0.50 0.08 0.27 0.15 r 10 0.93 0.03 0.03 0.02 A 11 0.65 0.03 0.04 0.28 w 12 0.02 0 0 0.98 T 13 0.02 0.01 0 0.97 T 14 0.98 0.01 0.01 0 A 15 0.97 0.01 0 0.02 A 16 0.42 0.12 0.08 0.37 w 17 0.32 0.13 0.12 0.43 w 18 0.79 0.09 0.03 0.09 A 19 0.18 0.39 0.17 0.26 y 20 0.01 0.98 0.01 0.01 C |
| Binding TFs: | UP00333A (Fungal Zn(2)-Cys(6) binuclear cluster domain) |
| Binding Sites: | AAAGTCCG AAGCGCGC AAGTCCGA AAGTCCGC AATGTCCG AGCGCGCG ATATCCGC ATCCCCGC ATCTCCGC ATGTCCGA ATGTCCGC ATGTGCGC ATTGTCCG CCCGCGCG CCGCGCGC CCGCGCGG CGGACATA GCGCGCGC GCGCGCTA AATACCGC |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
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