DNA Binding Motif
| Accessions: | UP00589D_1 (UniPROBE 20160601) |
| Names: | ARA, FKHL7, forkhead box protein C1, Forkhead-related protein FKHL7, Forkhead-related transcription factor 3, FOXC1_L130F_R1, FREAC-3, FREAC3, IGDA, IHG1, IRID1, RIEG3 |
| Organisms: | Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 22 |
| Consensus: | rwwygyrTwwAaTAwAwrdAwr |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.53 0.07 0.25 0.14 r 02 0.26 0.14 0.20 0.40 w 03 0.41 0.20 0.09 0.30 w 04 0.17 0.34 0.23 0.25 y 05 0.23 0.21 0.39 0.16 g 06 0.15 0.37 0.18 0.29 y 07 0.54 0.08 0.35 0.03 r 08 0.09 0.09 0.11 0.71 T 09 0.40 0.10 0.08 0.42 w 10 0.27 0.12 0.04 0.58 w 11 0.71 0.08 0.12 0.09 A 12 0.62 0.13 0.05 0.20 a 13 0.14 0.13 0.02 0.71 T 14 0.76 0.06 0.16 0.03 A 15 0.35 0.15 0.08 0.43 w 16 0.68 0.15 0.11 0.06 A 17 0.29 0.12 0.21 0.38 w 18 0.47 0.04 0.27 0.22 r 19 0.39 0.10 0.26 0.26 d 20 0.68 0.10 0.18 0.04 A 21 0.44 0.08 0.08 0.40 w 22 0.39 0.11 0.32 0.19 r |
| Binding TFs: | UP00589D (Fork head domain) |
| Binding Sites: | AATATATT ATAAAATA ATAATATA ATAATTAG GAAAAAAA TCATTAAA TTATTAAA AAATATGA AATACAAG AATTATCA AGAACAAA AGTATAAA ATAAACGA ATAAGATA ATAATCAT ATACATAA ATGTATTA ATTGTTAC ATTTACAA TACATATA |
| Publications: | Barrera LA, Vedenko A, Kurland JV, Rogers JM, Gisselbrecht SS, Rossin EJ, Woodard J, Mariani L, Kock KH, Inukai S, Siggers T, Shokri L, Gordân R, Sahni N, Cotsapas C, Hao T, Yi S, Kellis M, Daly MJ, Vidal M, Hill DE, Bulyk ML. Survey of variation in human transcription factors reveals prevalent DNA binding changes. Science 351:1450-4 (2016). [Pubmed] |
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