DNA Binding Motif

						

			
Accessions: PL0019.1 (JASPAR 2024)

			
Names: hlh-1
Organisms: Caenorhabditis elegans
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: PBM
Length: 16
Consensus: ksrACAGCTGTyrwrr
Weblogo: 
PSSM: P0      A      C      G      T
01     16      9     35     37      k
02     21     31     34     13      s
03     25      7     64      2      r
04     70      6     11     11      A
05      2     92      2      1      C
06     92      1      3      1      A
07     12     13     71      1      G
08      1     71     13     12      C
09      1      3      1     92      T
10      1      2     92      2      G
11     16      7      3     71      T
12      2     64      7     25      y
13     30     12     44     12      r
14     35     17     19     27      w
15     33     19     35     11      r
16     31     21     35     10      r
Type: Heterodimer
Binding TFs: P22980 (Helix-loop-helix DNA-binding domain)
P22980
			
Publications: Grove C.A, De Masi F, Barrasa M.I, Newburger D.E, Alkema M.J, Bulyk M.L, Walhout A.J. A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors. Cell 138:314-27 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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