DNA Binding Motif
| Accessions: | UP00062A_2 (UniPROBE 20160601) |
| Names: | AA682046, Sox-4, Sox4, SRY-box containing gene 4, Transcription factor SOX-4 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 17 |
| Consensus: | grwarAATTGTtasrra |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.22 0.25 0.41 0.13 g 02 0.27 0.24 0.30 0.20 r 03 0.47 0.16 0.12 0.25 w 04 0.41 0.11 0.24 0.24 a 05 0.43 0.10 0.29 0.18 r 06 0.79 0.01 0.17 0.04 A 07 0.93 0.01 0.04 0.02 A 08 0.01 0.02 0.01 0.95 T 09 0.02 0.01 0.01 0.96 T 10 0.12 0.03 0.84 0.01 G 11 0.10 0.01 0.01 0.88 T 12 0.13 0.24 0.09 0.54 t 13 0.34 0.20 0.24 0.21 a 14 0.23 0.27 0.29 0.21 s 15 0.29 0.10 0.42 0.19 r 16 0.31 0.18 0.28 0.23 r 17 0.45 0.16 0.21 0.19 a |
| Binding TFs: | UP00062A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) |
| Binding Sites: | AAACAAAG AACAAAAG AACAAAGA AACAAAGC AACAATAA AACAATAG AACAATGG AATTGTTC ACAAAGAA ACAAAGAG ACAAAGGA ACAACAAT ACAATAGA AGAACAAT AGACAAAG AGACAATA CTTTGTTA CTTTGTTC GAACAATA GACAAAGA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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