DNA Binding Motif

						

			
Accessions: 4i2o_AB (3D-footprint 20231221)

			
Names: FixK2 protein
Organisms: Bradyrhizobium japonicum
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: The Structure of FixK2 from Bradyrhizobium japonicum
Length: 12
Consensus: tGAnnnnnnTCa
Weblogo: 
PSSM: P0      A      C      G      T
01     16     13     13     54      t
02      0      0     96      0      G
03     96      0      0      0      A
04     24     24     24     24      n
05     24     24     24     24      n
06     24     24     24     24      n
07     24     24     24     24      n
08     24     24     24     24      n
09     24     24     24     24      n
10      0      0      0     96      T
11      0     96      0      0      C
12     54     13     16     13      a
Binding TFs: 4i2o_A / 4i2o_B (Cyclic nucleotide-binding domain, Bacterial regulatory proteins, crp family, Crp-like helix-turn-helix domain)
Binding Sites: 4i2o_W
4i2o_X
			
Publications: Bonnet M, Kurz M, Mesa S, Briand C, Hennecke H, Grütter M.G. The structure of Bradyrhizobium japonicum transcription factor FixK2 unveils sites of DNA binding and oxidation. The Journal of biological chemistry 288:14238-46 (2013). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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