DNA Binding Motif
| Accessions: | MA0798.2 (JASPAR 2024) |
| Names: | RFX3 |
| Organisms: | Homo sapiens |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ChIP-seq |
| Length: | 14 |
| Consensus: | ykGTTGCyATGGcr |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 560 1678 966 1141 y 02 686 927 1370 1362 k 03 136 46 4093 70 G 04 36 91 78 4140 T 05 129 263 78 3875 T 06 325 144 3597 279 G 07 43 3940 41 321 C 08 50 2115 35 2145 y 09 3961 100 222 62 A 10 316 150 414 3465 T 11 293 46 3881 125 G 12 376 230 3574 165 G 13 1072 1641 748 884 c 14 2244 432 1117 552 r |
| Type: | Heterodimer |
| Binding TFs: | P48380 (RFX DNA-binding domain, RFX1 transcription activation region ) P48380 |
| Binding Sites: | MA0798.2.1 MA0798.2.2 MA0798.2.3 MA0798.2.4 MA0798.2.10 MA0798.2.11 MA0798.2.12 MA0798.2.13 MA0798.2.14 MA0798.2.15 MA0798.2.16 MA0798.2.17 MA0798.2.18 MA0798.2.19 MA0798.2.20 MA0798.2.5 / MA0798.2.6 MA0798.2.7 MA0798.2.8 MA0798.2.9 |
| Publications: | Jolma A., Kivioja T., Toivonen J., Cheng L., Wei G., Enge M., Taipale M., Vaquerizas J. M., Yan J., Sillanpaa M. J., Bonke M., Palin K., Talukder S., Hughes T. R., Luscombe N. M., Ukkonen E., Taipale J. Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities.. Genome Res. 20:861-873 (2010). [Pubmed] |
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