DNA Binding Motif

						

			
Accessions: GCM2_SOX15_2_3 (HumanTF2 1.0)

			
Names: GCM2_SOX15
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 19
Consensus: ATRcGGGywbraaACAAwr
Weblogo: 
PSSM: P0      A      C      G      T
01    242     47     42     24      A
02     51     40      0    284      T
03     77      0    207      4      R
04     43    284     59     72      c
05     12     13    284     43      G
06      0      4    284      8      G
07      0      0    284      4      G
08     17     82     29    156      y
09    133     25     44     81      w
10     58     73     72     81      b
11     97     66     84     37      r
12    203     55     81     86      a
13    144     62     37     41      a
14    284     14     23     55      A
15      2    284     18     32      C
16    284     30      8     13      A
17    284      6     12     13      A
18     95     11      0    189      w
19    143     24    112      5      r
Type: Heterodimer
Binding TFs: GCM2_TF1 (GCM motif protein)
SOX15_TF2 (HMG (high mobility group) box, Domain of unknown function (DUF1898))
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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