DNA Binding Motif

						

			
Accessions: MA1917.1 (JASPAR 2024)

			
Names: SoxC
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 20
Consensus: mwwwwthATTGTTttttwww
Weblogo: 
PSSM: P0      A      C      G      T
01    305    250    203    242      m
02    364    175    207    254      w
03    316    184    220    279      w
04    257    189    229    326      w
05    268    196    247    289      w
06    240    240    231    289      t
07    256    276    170    298      h
08    805     35     63     97      A
09     51     34     42    873      T
10     33     24     34    909      T
11     60     42    849     48      G
12     51     34     38    878      T
13     66     59     72    804      T
14    246    215    234    304      t
15    241    208    229    321      t
16    244    209    236    312      t
17    243    220    238    300      t
18    255    215    235    296      w
19    256    216    232    296      w
20    257    219    232    292      w
Type: Heterodimer
Binding TFs: Q4H2S1 (HMG (high mobility group) box)
Q4H2S1
			
Publications: Chen WC, Pauls S, Bacha J, Elgar G, Loose M, Shimeld SM. Dissection of a Ciona regulatory element reveals complexity of cross-species enhancer activity. Dev Biol 390:261-72 (2014). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.